, including all inherited members.
activeDeme_ (defined in Algorithm) | Algorithm | [protected] |
advanceGeneration(StateP state, DemeP deme) | Clonalg | [virtual] |
Algorithm::advanceGeneration(StateP state) | Algorithm | [inline, virtual] |
Algorithm() (defined in Algorithm) | Algorithm | [inline] |
areGenotypesAdded_ (defined in Clonalg) | Clonalg | [protected] |
bcastTermination(StateP state) | Algorithm | [virtual] |
beta | Clonalg | [protected] |
bImplicitEvaluation_ | Algorithm | [protected] |
bImplicitMutation_ | Algorithm | [protected] |
bImplicitParallel_ | Algorithm | [protected] |
birthPhase(StateP state, DemeP deme, std::vector< IndividualP > &clones) (defined in Clonalg) | Clonalg | |
bSynchronized_ | Algorithm | [protected] |
c | Clonalg | [protected] |
Clonalg() (defined in Clonalg) | Clonalg | |
cloningPhase(StateP state, DemeP deme, std::vector< IndividualP > &clones) (defined in Clonalg) | Clonalg | |
cloningVersion | Clonalg | [protected] |
comm_ (defined in Algorithm) | Algorithm | [protected] |
copy(IndividualP source) | Algorithm | [inline] |
crossover_ | Algorithm | |
currentBest_ (defined in Algorithm) | Algorithm | [protected] |
d | Clonalg | [protected] |
demeCopy_ (defined in Algorithm) | Algorithm | [protected] |
dimension (defined in Clonalg) | Clonalg | [protected] |
evalOp_ | Algorithm | |
evaluate(IndividualP ind) | Algorithm | [inline] |
evaluate(IndividualP ind) | Algorithm | [inline] |
getName() | Algorithm | [inline] |
getParameterValue(StateP state, std::string name) | Algorithm | [inline, protected] |
hypermutationPhase(StateP state, DemeP deme, std::vector< IndividualP > &clones) (defined in Clonalg) | Clonalg | |
implicitEvaluate(IndividualP ind) | Algorithm | |
implicitMutate(IndividualP ind) | Algorithm | |
implicitParallelOperate(StateP state) | Algorithm | |
initialize(StateP state) | Clonalg | [virtual] |
initializeImplicit(StateP state) | Algorithm | |
initializeParallel(StateP state) | Algorithm | [inline] |
initializeParallel(StateP state) | Algorithm | |
initializePopulation(StateP) | Algorithm | [virtual] |
isConsistent_ | Algorithm | [protected] |
isImplicitParallel() | Algorithm | [inline] |
isMember(IndividualP single, std::vector< IndividualP > &pool) | Algorithm | [inline] |
isParallel() | Algorithm | [inline, virtual] |
jobSize_ (defined in Algorithm) | Algorithm | [protected] |
lbound (defined in Clonalg) | Clonalg | [protected] |
markAntibodies(DemeP deme) | Clonalg | |
mate(IndividualP p1, IndividualP p2, IndividualP child) | Algorithm | [inline] |
mutate(const std::vector< IndividualP > &pool) | Algorithm | [inline] |
mutate(const IndividualP victim) | Algorithm | [inline] |
mutate(const IndividualP victim) | Algorithm | [inline] |
mutate(const std::vector< IndividualP > &pool) | Algorithm | [inline] |
mutation_ | Algorithm | |
myJob_ | Algorithm | [protected] |
n | Clonalg | [protected] |
name_ | Algorithm | [protected] |
read() (defined in Algorithm) | Algorithm | [inline, virtual] |
receivedMut_ | Algorithm | [protected] |
registerParallelParameters(StateP state) | Algorithm | [inline] |
registerParallelParameters(StateP state) | Algorithm | |
registerParameter(StateP state, std::string name, voidP value, enum ECF::type T, std::string description="") | Algorithm | [inline, protected] |
registerParameters(StateP state) | Clonalg | [virtual] |
removeFrom(IndividualP victim, std::vector< IndividualP > &pool) | Algorithm | [inline] |
replacePopulation(StateP state, DemeP deme, std::vector< IndividualP > &clones) | Clonalg | |
replaceWith(IndividualP oldInd, IndividualP newInd) | Algorithm | [inline] |
replaceWith(uint oldIndId, IndividualP newInd) | Algorithm | [inline] |
replaceWith(IndividualP oldInd, IndividualP newInd) | Algorithm | |
replaceWith(uint oldIndId, IndividualP newInd) | Algorithm | [inline] |
requestIds_ | Algorithm | [protected] |
requestMutIds_ | Algorithm | [protected] |
requests_ (defined in Algorithm) | Algorithm | [protected] |
requestsMut_ (defined in Algorithm) | Algorithm | [protected] |
restoreIndividuals(std::vector< uint >) | Algorithm | [protected] |
restorePopulation() | Algorithm | [protected] |
selBestOp (defined in Algorithm) | Algorithm | [protected] |
selectionOp | Algorithm | [protected] |
selectionPhase(StateP state, DemeP deme, std::vector< IndividualP > &clones) (defined in Clonalg) | Clonalg | |
selectionScheme | Clonalg | [protected] |
sentInds_ | Algorithm | [protected] |
setConsistency(IndividualP) | Algorithm | [protected] |
sortPopulationByFitness(IndividualP ab1, IndividualP ab2) | Clonalg | [inline, protected, static] |
sortPopulationByParentAndFitness(IndividualP ab1, IndividualP ab2) | Clonalg | [inline, protected, static] |
state_ (defined in Algorithm) | Algorithm | |
stored_ | Algorithm | [protected] |
storedInds_ (defined in Algorithm) | Algorithm | [protected] |
storeGenotypes(std::vector< IndividualP > &) | Algorithm | [protected] |
storeIndividual(IndividualP) | Algorithm | [protected] |
totalEvaluations_ (defined in Algorithm) | Algorithm | [protected] |
ubound (defined in Clonalg) | Clonalg | [protected] |
wastedEvaluations_ (defined in Algorithm) | Algorithm | [protected] |
~Algorithm() (defined in Algorithm) | Algorithm | [inline, virtual] |