Mutation class - handles mutation of _individuals_ (as opposed to MutationOp class that mutates genotypes). More...

#include <Mutation.h>

Public Member Functions
bool	mutate (IndividualP ind)
	Mutate an individual.
uint	mutation (const std::vector< IndividualP > &)
	Perform mutation on a pool of individuals.
void	registerParameters (StateP)
bool	initialize (StateP)
Public Attributes
std::vector< std::vector < MutationOpP > >	operators
	vectors of mutation operators for each genotype
std::vector< std::vector < double > >	opProb
	usage probabilities for each MutationOp operator
IndividualP	currentInd
Protected Attributes
StateP	state_
double	indMutProb_
	mutation probability of an individual
double	geneMutProb_
uint	mutateGenotypes_
	what genotypes (if more than one) to mutate (random, all)
std::vector< bool >	protectedGenotypes_
	protected (non-mutatable) genotypes flags

Detailed Description

Mutation class - handles mutation of _individuals_ (as opposed to MutationOp class that mutates genotypes).

Contains pointers to every MutationOp for every genotype used in individuals. Determines which MutationOp will be used for each genotype.

Definition at line 55 of file Mutation.h.

Member Function Documentation

bool Mutation::mutate ( IndividualP ind )

Mutate an individual.

May mutate one or more genotypes in given individual. Determines which MutationOp to use on each genotype.

Definition at line 124 of file Mutation.cpp.

uint Mutation::mutation ( const std::vector< IndividualP > & pool )

Perform mutation on a pool of individuals.

Mutation probability may be defined with 2 parameters:

if geneMutProb_ is defined in config, use that parameter with genotype's genome size
otherwise use indMutProb_

Definition at line 104 of file Mutation.cpp.

The documentation for this class was generated from the following files: